Egg Casserole in Muffin Cups

These Egg Casserole in Muffin Cups are a delicious, protein-packed breakfast you can take on the go. Each fluffy mini casserole is loaded with eggs, cheese, and your favorite veggies or breakfast meats. They’re baked in a muffin tin for perfectly portioned servings that are ideal for meal prep or quick weekday mornings. Warm, satisfying, and customizable — this recipe makes breakfast easy and fun.

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Mini egg casserole muffins with cheese and vegetables

Egg Casserole in Muffin Cups


  • Author: Sarah
  • Total Time: 32 minutes
  • Yield: 12 muffins 1x

Description

These Egg Casserole in Muffin Cups are a delicious, protein-packed breakfast you can take on the go. Each fluffy mini casserole is loaded with eggs, cheese, and your favorite veggies or breakfast meats. They’re baked in a muffin tin for perfectly portioned servings that are ideal for meal prep or quick weekday mornings. Warm, satisfying, and customizable — this recipe makes breakfast easy and fun.


Ingredients

Scale
  • 8 large eggs
  • ½ cup milk (whole or 2%)
  • ½ cup shredded cheddar cheese (or your favorite)
  • ½ cup diced bell peppers
  • ¼ cup chopped onions
  • ½ cup cooked and crumbled bacon or sausage
  • ½ tsp salt
  • ¼ tsp black pepper
  • Cooking spray or butter (for greasing the muffin tin)

Instructions

  1. Preheat the oven: Set to 375°F (190°C). Grease a 12-cup muffin pan generously with cooking spray or butter.
  2. Prepare the egg mixture: In a large mixing bowl, whisk together eggs, milk, salt, and pepper until smooth.
  3. Add fillings: Stir in cheese, vegetables, and cooked meat of choice.
  4. Fill muffin cups: Divide the mixture evenly among the muffin cups, filling each about ¾ full.
  5. Bake: Bake for 18–22 minutes, or until the tops are set and lightly golden.
  6. Cool and serve: Let cool for a few minutes before removing from the pan. Serve warm or store for later.

Notes

Veggie options: Try spinach, mushrooms, or diced tomatoes. Cheese swaps: Monterey Jack, feta, or pepper jack work well. Make it spicy with jalapeños or red pepper flakes. Dairy-free option: Use almond milk and skip the cheese or use a dairy-free alternative. Storage: Refrigerate up to 5 days or freeze up to 2 months. Reheat in microwave 30–40 seconds or oven 5 minutes at 350°F.

  • Prep Time: 10 minutes
  • Cook Time: 22 minutes
  • Category: Breakfast
  • Method: Baked
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin
  • Calories: 120
  • Sugar: 1g
  • Sodium: 260mg
  • Fat: 9g
  • Saturated Fat: 4g
  • Unsaturated Fat: 4g
  • Trans Fat: 0g
  • Carbohydrates: 1g
  • Fiber: 0g
  • Protein: 8g
  • Cholesterol: 110mg

Keywords: egg casserole, muffin cups, breakfast, high protein, meal prep

Why You’ll Love It

  • Grab-and-go breakfast: Perfect for busy mornings or lunchboxes.
  • Customizable: Add your favorite ingredients — cheese, veggies, or bacon.
  • Protein-rich: Each muffin delivers a solid boost of morning energy.
  • Freezer-friendly: Reheat quickly for a no-stress breakfast.

If you’re looking for more easy morning inspiration, check out our Breakfast Protein Biscuits or these hearty California Chicken Breakfast Burritos.

Ingredients

  • 8 large eggs
  • ½ cup milk (whole or 2%)
  • ½ cup shredded cheddar cheese (or your favorite)
  • ½ cup diced bell peppers
  • ¼ cup chopped onions
  • ½ cup cooked and crumbled bacon or sausage
  • ½ tsp salt
  • ¼ tsp black pepper
  • Cooking spray or butter (for greasing the muffin tin)

Instructions

  1. Preheat the oven: Set to 375°F (190°C). Grease a 12-cup muffin pan generously with cooking spray or butter.
  2. Prepare the egg mixture: In a large mixing bowl, whisk together eggs, milk, salt, and pepper until smooth.
  3. Add fillings: Stir in cheese, vegetables, and cooked meat of choice.
  4. Fill muffin cups: Divide the mixture evenly among the muffin cups, filling each about ¾ full.
  5. Bake: Bake for 18–22 minutes, or until the tops are set and lightly golden.
  6. Cool and serve: Let cool for a few minutes before removing from the pan. Serve warm or store for later.

Tips & Variations

  • Veggie options: Try spinach, mushrooms, or diced tomatoes for extra color and flavor.
  • Cheese swaps: Monterey Jack, feta, or pepper jack all work well.
  • Make it spicy: Add jalapeños or a sprinkle of crushed red pepper flakes.
  • Dairy-free option: Use almond milk and skip the cheese or use a dairy-free alternative.

Pair these egg muffins with a side of Crispy Air Fryer Breakfast Potatoes or a refreshing glass of Carrot Juice for a balanced morning meal.

Storage & Reheating

  • Refrigerate: Store in an airtight container for up to 5 days.
  • Freeze: Place cooled muffins in a freezer bag and freeze for up to 2 months.
  • Reheat: Microwave for 30–40 seconds or warm in a 350°F oven for 5 minutes.

FAQs

Can I make these ahead of time?

Absolutely! These egg muffins are great for meal prep. Store in the fridge or freezer for an easy breakfast all week.

Can I use egg whites only?

Yes, substitute 1 cup of liquid egg whites for every 4 whole eggs. The muffins will be lighter but still delicious.

Why did my muffins deflate?

They may deflate slightly as they cool — that’s normal. For fluffier results, whisk air into the eggs before baking.

More to Try

Conclusion

Egg Casserole in Muffin Cups are the perfect breakfast solution — wholesome, easy to customize, and simple to store. Whether you’re feeding a crowd or prepping for the week, these little egg bites will make mornings smoother and more satisfying. Try them once, and they’ll become a staple in your breakfast rotation!

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